Haploflow
Description
Haploflow is a strain-aware viral genome assembler for short read sequence data. It uses a flow algorithm on a deBruijn graph data structure to resolve viral strains. Haploflow is still actively under development and release 0.1 is freely available under the GPLv3 license. It is written entirely in C++ and currently works on UNIX systems.
Type
Software
Subtypes
Evaluation Tool
Focuses
Generally applicable
Topics
Data analysis
Contacts
Prof. Dr. Alice McHardy
Helmholtz Centre for Infection Research
Deputy Coordinator Bioinformatics and Machine Learning
User groups / addressees
Scientists
keywords
Analyses
Preview image
File type
C++
License
GPL3